Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs6922617 chr6:41336101 C/T 7.39E-7 134 45.83 36.63 11.53 KM Plot
TGCT rs6922692 chr6:41336319 C/G 7.39E-7 134 11.53 36.63 45.83 KM Plot
TGCT rs6925438 chr6:156977624 A/G 0.000112 134 41.27 58.67 59.27 KM Plot
TGCT rs6925602 chr6:156977491 T/G 0.000115 133 41.97 58.67 59.27 KM Plot
TGCT rs6930652 chr6:156977876 T/G 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs6931995 chr6:156988309 G/A 0.000115 133 41.27 60.63 59.27 KM Plot
TGCT rs6939093 chr6:156976545 G/A 0.000103 134 39.38 74.4 59.27 KM Plot
TGCT rs6941469 chr6:156977182 C/T 0.000103 134 39.38 74.4 59.27 KM Plot
TGCT rs6942043 chr6:156977505 C/T 0.000115 133 41.97 58.67 59.27 KM Plot
TGCT rs6952284 chr7:127150054 G/A 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs6961380 chr7:127148072 T/A 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs6962032 chr7:127151489 G/A 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs6978712 chr7:127147763 A/G 1.49E-5 134 100.87 37.53 42.1 KM Plot
TGCT rs6992733 chr8:124076688 A/C 5.72E-5 134 37.42 49.93 56.7 KM Plot
TGCT rs6993476 chr8:103104360 G/A 0.000112 133 42.03 45.1 48.45 KM Plot